Contributing R packages

The list of R packages from which developers participate in the hackathon or are contributing otherwise.

adegenet

title: adegenet: a R Package for the Multivariate Analysis of Genetic Markers
development page: https://github.com/thibautjombart/adegenet
maintainer: Thibaut Jombart (website | Github | email)

You will need the package devtools to be able to install the devel version of adegenet. To install devtools:

install.packages("devtools")
library("devtools")

To install adegenet devel:

install_github("thibautjombart/adegenet")
library("adegenet")

title: poppr, An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
development page: https://github.com/grunwaldlab/poppr
maintainer: Zhian N. Kamvar and Niklaus J. Grünwald

Maintenance version (bug fixes and minor improvements):

devtools::install_github("grunwaldlab/poppr")

Development version (potentially major changes/improvements. Might be unstable):

devtools::install_github("grunwaldlab/poppr@devel")

title: OutFLANK, an R package for performing Fst-outlier tests based on inferred distribution of neutral Fst.
development page: https://github.com/whitlock/OutFLANK
maintainer: Michael C Whitlock and Katie E Lotterhos

title: Phylogenetic Analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
development page: https://github.com/KlausVigo/phangorn
maintainer: Klaus Schliep

title: Summaries and Population Structure Analyses of Haplotypic and Genotypic Data
development page: https://github.com/EricArcher/strataG
maintainer: Eric Archer email