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@sourmash-bio

sourmash, for large-scale biological sequence search!

Quickly search, compare, and analyze genomic and metagenomic data sets.

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  1. sourmash sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 482 80

  2. branchwater branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    HTML 10 2

  3. wort wort Public

    A database for signatures of public genomic sources

    Python 18 2

  4. sourmash_plugin_branchwater sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 17 4

  5. database-examples database-examples Public

    Example workflows and useful scripts for building your own sourmash databases

    Python 2

  6. sourmash-mixers sourmash-mixers Public

    A meta-package to install a number of sourmash plugins!

    4

Repositories

Showing 10 of 37 repositories
  • sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    sourmash-bio/sourmash’s past year of commit activity
    Python 482 80 688 (4 issues need help) 62 Updated Jan 2, 2025
  • sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    sourmash-bio/sourmash_plugin_branchwater’s past year of commit activity
    Python 17 AGPL-3.0 4 94 17 Updated Jan 2, 2025
  • 2024-ictv-challenge-sourmash Public
    sourmash-bio/2024-ictv-challenge-sourmash’s past year of commit activity
    Python 0 0 0 0 Updated Dec 31, 2024
  • branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    sourmash-bio/branchwater’s past year of commit activity
    HTML 10 2 22 1 Updated Dec 31, 2024
  • sourmash_plugin_directsketch Public
    sourmash-bio/sourmash_plugin_directsketch’s past year of commit activity
    Rust 1 BSD-3-Clause 1 17 3 Updated Dec 30, 2024
  • sourmash_plugin_tables Public

    Tables is a python-based sourmash plugin to convert the standard output files from base sourmash into an OTU format. See README for more information.

    sourmash-bio/sourmash_plugin_tables’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Dec 19, 2024
  • 2024-sketch-animal-genomes Public

    Sketch human, mouse, cow, chick, and other animal genomes.

    sourmash-bio/2024-sketch-animal-genomes’s past year of commit activity
    Python 0 0 0 0 Updated Dec 14, 2024
  • 2024-benchmark-gather Public

    Benchmarking code for various gather implementations

    sourmash-bio/2024-benchmark-gather’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 23, 2024
  • wort Public

    A database for signatures of public genomic sources

    sourmash-bio/wort’s past year of commit activity
    Python 18 2 22 1 Updated Nov 17, 2024
  • sourmash.bio Public
    sourmash-bio/sourmash.bio’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 6, 2024
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