Add table position tag (#25)

shimming-toolbox · Jan 20, 2025 · 4528aa0 · 4528aa0
1 parent f0b2ab3
commit 4528aa0
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Showing 17 changed files with 295 additions and 48 deletions.
diff --git a/ds_b0/sub-fieldmap/fmap/sub-1_acq-gre_magnitude1.json b/ds_b0/sub-fieldmap/fmap/sub-1_acq-gre_magnitude1.json
@@ -25,6 +25,10 @@
     "AcquisitionNumber":1,
     "SliceThickness":4.4,
     "SAR":0.0345734,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber":1,
     "EchoTime":0.00239,
     "RepetitionTime":0.009,
@@ -68,6 +72,6 @@
         -0.111469
     ],
     "InPlanePhaseEncodingDirectionDICOM":"COL",
-    "ConversionSoftware":"dcm2niix",
-    "ConversionSoftwareVersion":"v1.0.20230411"
-}
+    "ConversionSoftware":"",
+    "ConversionSoftwareVersion":""
+}
diff --git a/ds_b0/sub-fieldmap/fmap/sub-fieldmap_magnitude1.json b/ds_b0/sub-fieldmap/fmap/sub-fieldmap_magnitude1.json
@@ -25,6 +25,10 @@
 	"SliceThickness": 3,
 	"SpacingBetweenSlices": 3,
 	"SAR": 0.00453667,
+	"TablePosition": [
+		0,
+		0,
+		0	],
 	"EchoNumber": 1,
 	"EchoTime": 0.0025,
 	"RepetitionTime": 0.5,
@@ -73,6 +77,6 @@
 		1,
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
-	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20200331"
+	"ConversionSoftware": "",
+	"ConversionSoftwareVersion": ""
 }
diff --git a/ds_b0/sub-fieldmap/fmap/sub-fieldmap_magnitude2.json b/ds_b0/sub-fieldmap/fmap/sub-fieldmap_magnitude2.json
@@ -25,6 +25,10 @@
 	"SliceThickness": 3,
 	"SpacingBetweenSlices": 3,
 	"SAR": 0.00453667,
+	"TablePosition": [
+		0,
+		0,
+		0	],
 	"EchoNumber": 2,
 	"EchoTime": 0.0055,
 	"RepetitionTime": 0.5,
@@ -73,6 +77,6 @@
 		1,
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
-	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20200331"
+	"ConversionSoftware": "",
+	"ConversionSoftwareVersion": ""
 }
diff --git a/ds_b0/sub-fieldmap/fmap/sub-fieldmap_phase1.json b/ds_b0/sub-fieldmap/fmap/sub-fieldmap_phase1.json
@@ -25,6 +25,10 @@
 	"SliceThickness": 3,
 	"SpacingBetweenSlices": 3,
 	"SAR": 0.00453667,
+	"TablePosition": [
+		0,
+		0,
+		0	],
 	"EchoNumber": 1,
 	"EchoTime": 0.0025,
 	"RepetitionTime": 0.5,
@@ -73,6 +77,6 @@
 		1,
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
-	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20200331"
+	"ConversionSoftware": "",
+	"ConversionSoftwareVersion": ""
 }
diff --git a/ds_b0/sub-fieldmap/fmap/sub-fieldmap_phase2.json b/ds_b0/sub-fieldmap/fmap/sub-fieldmap_phase2.json
@@ -25,6 +25,10 @@
 	"SliceThickness": 3,
 	"SpacingBetweenSlices": 3,
 	"SAR": 0.00453667,
+	"TablePosition": [
+		0,
+		0,
+		0	],
 	"EchoNumber": 2,
 	"EchoTime": 0.0055,
 	"RepetitionTime": 0.5,
@@ -73,6 +77,6 @@
 		1,
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
-	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20200331"
+	"ConversionSoftware": "",
+	"ConversionSoftwareVersion": ""
 }
diff --git a/ds_b0/sub-realtime/anat/sub-realtime_unshimmed_e1.json b/ds_b0/sub-realtime/anat/sub-realtime_unshimmed_e1.json
@@ -30,6 +30,10 @@
     "SliceThickness": 3,
     "SpacingBetweenSlices": 3.6,
     "SAR": 0.0040273,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber": 1,
     "EchoTime": 0.0025,
     "RepetitionTime": 1,
@@ -91,7 +95,7 @@
         0
     ],
     "InPlanePhaseEncodingDirectionDICOM": "COL",
-    "ConversionSoftware": "dcm2niix",
-    "ConversionSoftwareVersion": "v1.0.20200331",
-    "Dcm2bidsVersion": "2.1.4"
-}
+    "ConversionSoftware": "",
+    "ConversionSoftwareVersion": "",
+    "Dcm2bidsVersion": ""
+}
diff --git a/ds_b0/sub-realtime/anat/sub-realtime_unshimmed_e2.json b/ds_b0/sub-realtime/anat/sub-realtime_unshimmed_e2.json
@@ -30,6 +30,10 @@
     "SliceThickness": 3,
     "SpacingBetweenSlices": 3.6,
     "SAR": 0.0040273,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber": 2,
     "EchoTime": 0.0055,
     "RepetitionTime": 1,
@@ -91,7 +95,7 @@
         0
     ],
     "InPlanePhaseEncodingDirectionDICOM": "COL",
-    "ConversionSoftware": "dcm2niix",
-    "ConversionSoftwareVersion": "v1.0.20200331",
-    "Dcm2bidsVersion": "2.1.4"
-}
+    "ConversionSoftware": "",
+    "ConversionSoftwareVersion": "",
+    "Dcm2bidsVersion": ""
+}
diff --git a/ds_b0/sub-realtime/anat/sub-realtime_unshimmed_e3.json b/ds_b0/sub-realtime/anat/sub-realtime_unshimmed_e3.json
@@ -30,6 +30,10 @@
     "SliceThickness": 3,
     "SpacingBetweenSlices": 3.6,
     "SAR": 0.0040273,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber": 3,
     "EchoTime": 0.0085,
     "RepetitionTime": 1,
@@ -91,7 +95,7 @@
         0
     ],
     "InPlanePhaseEncodingDirectionDICOM": "COL",
-    "ConversionSoftware": "dcm2niix",
-    "ConversionSoftwareVersion": "v1.0.20200331",
-    "Dcm2bidsVersion": "2.1.4"
-}
+    "ConversionSoftware": "",
+    "ConversionSoftwareVersion": "",
+    "Dcm2bidsVersion": ""
+}
diff --git a/ds_b0/sub-realtime/fmap/sub-realtime_fieldmap.json b/ds_b0/sub-realtime/fmap/sub-realtime_fieldmap.json
@@ -31,6 +31,10 @@
   "AcquisitionNumber": 1,
   "SliceThickness": 3,
   "SAR": 0.0315697,
+  "TablePosition": [
+    0,
+    0,
+    0	],
   "EchoNumber": 2,
   "EchoTime": 0.00492,
   "RepetitionTime": 0.786667,
@@ -72,7 +76,7 @@
     -1
   ],
   "InPlanePhaseEncodingDirectionDICOM": "ROW",
-  "ConversionSoftware": "dcm2niix",
-  "ConversionSoftwareVersion": "v1.0.20201020",
-  "Dcm2bidsVersion": "2.1.4"
-}
+  "ConversionSoftware": "",
+  "ConversionSoftwareVersion": "",
+  "Dcm2bidsVersion": ""
+}
diff --git a/ds_b0/sub-realtime/fmap/sub-realtime_magnitude1.json b/ds_b0/sub-realtime/fmap/sub-realtime_magnitude1.json
@@ -30,6 +30,10 @@
     "AcquisitionNumber": 1,
     "SliceThickness": 3,
     "SAR": 0.0315697,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber": 1,
     "EchoTime": 0.00246,
     "RepetitionTime": 0.786667,
@@ -69,7 +73,7 @@
         -1
     ],
     "InPlanePhaseEncodingDirectionDICOM": "ROW",
-    "ConversionSoftware": "dcm2niix",
-    "ConversionSoftwareVersion": "v1.0.20201020",
-    "Dcm2bidsVersion": "2.1.4"
-}
+    "ConversionSoftware": "",
+    "ConversionSoftwareVersion": "",
+    "Dcm2bidsVersion": ""
+}
diff --git a/ds_b0/sub-realtime/fmap/sub-realtime_magnitude2.json b/ds_b0/sub-realtime/fmap/sub-realtime_magnitude2.json
@@ -30,6 +30,10 @@
     "AcquisitionNumber": 1,
     "SliceThickness": 3,
     "SAR": 0.0315697,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber": 2,
     "EchoTime": 0.00492,
     "RepetitionTime": 0.786667,
@@ -69,7 +73,7 @@
         -1
     ],
     "InPlanePhaseEncodingDirectionDICOM": "ROW",
-    "ConversionSoftware": "dcm2niix",
-    "ConversionSoftwareVersion": "v1.0.20201020",
-    "Dcm2bidsVersion": "2.1.4"
-}
+    "ConversionSoftware": "",
+    "ConversionSoftwareVersion": "",
+    "Dcm2bidsVersion": ""
+}
diff --git a/ds_b0/sub-realtime/fmap/sub-realtime_phasediff.json b/ds_b0/sub-realtime/fmap/sub-realtime_phasediff.json
@@ -31,6 +31,10 @@
     "AcquisitionNumber": 1,
     "SliceThickness": 3,
     "SAR": 0.0315697,
+    "TablePosition": [
+      0,
+      0,
+      0	],
     "EchoNumber": 2,
     "EchoTime": 0.00492,
     "RepetitionTime": 0.786667,
@@ -72,7 +76,7 @@
         -1
     ],
     "InPlanePhaseEncodingDirectionDICOM": "ROW",
-    "ConversionSoftware": "dcm2niix",
-    "ConversionSoftwareVersion": "v1.0.20201020",
-    "Dcm2bidsVersion": "2.1.4"
-}
+    "ConversionSoftware": "",
+    "ConversionSoftwareVersion": "",
+    "Dcm2bidsVersion": ""
+}
diff --git a/ds_tb1/derivatives/shimming-toolbox/sub-tb1tfl/sub-tb1tfl_mask.json b/ds_tb1/derivatives/shimming-toolbox/sub-tb1tfl/sub-tb1tfl_mask.json
@@ -1,8 +1,12 @@
 {
 	"PatientPosition": "HFS",
-        "RawSources": "acdc_spine_7t_011p_localizer_np11_sphere_20210928093219_46_i00001",
-        "Type": "Phantom",
+  "RawSources": "acdc_spine_7t_011p_localizer_np11_sphere_20210928093219_46_i00001",
+  "Type": "Phantom",
 	"SliceThickness": 5,
+	"TablePosition": [
+		0,
+		0,
+		0	],
 	"SpacingBetweenSlices": 20,
 	"BaseResolution": 256,
 	"PhaseResolution": 1,
@@ -15,6 +19,6 @@
 		-1	],
 	"ImageOrientationText": "Sag",
 	"InPlanePhaseEncodingDirectionDICOM": "ROW",
-	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20211006"
+	"ConversionSoftware": "",
+	"ConversionSoftwareVersion": ""
 }
diff --git a/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json b/ds_tb1/sub-tb1tfl/rfmap/sub-tb1tfl_run-01_TB1map_uncombined.json
@@ -1 +1,65 @@
-{"Modality": "MR", "MagneticFieldStrength": 7, "ImagingFrequency": 297.2, "Manufacturer": "Siemens", "ManufacturersModelName": "Investigational_Device_7T", "InstitutionName": "Hospital", "InstitutionalDepartmentName": "Department", "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP", "DeviceSerialNumber": "79017", "StationName": "AWP79017", "BodyPartExamined": "CSPINE", "PatientPosition": "HFS", "ProcedureStepDescription": "Development^Dr. Cohen-Adad", "SoftwareVersions": "syngo MR E12", "MRAcquisitionType": "2D", "SeriesDescription": "standard_tra", "ProtocolName": "standard_tra", "ScanningSequence": "GR", "SequenceVariant": "SK\\SP", "SequenceName": "*tfl2d1_16", "SeriesNumber": 53, "AcquisitionTime": "12:16:59.472500", "AcquisitionNumber": 1, "ImageComments": "Complex uncombined B1+ map (nT/V)", "SliceThickness": 7, "SpacingBetweenSlices": 14, "SAR": 0.00443249, "EchoTime": 0.00153, "RepetitionTime": 3.76, "SpoilingState": true, "FlipAngle": 5, "PartialFourier": 1, "BaseResolution": 64, "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224], "TxRefAmp": 400, "PhaseResolution": 1, "ReceiveCoilName": "NP11_ACDC_SPINE", "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H", "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap", "RefLinesPE": 16, "CoilCombinationMethod": "Sum of Squares", "ConsistencyInfo": "N4_VE12U_LATEST_20181126", "MatrixCoilMode": "GRAPPA", "MultibandAccelerationFactor": 5, "PercentPhaseFOV": 68.75, "PercentSampling": 100, "PhaseEncodingSteps": 44, "AcquisitionMatrixPE": 44, "ReconMatrixPE": 44, "ParallelReductionFactorInPlane": 2, "PixelBandwidth": 440, "DwellTime": 1.78e-05, "PhaseEncodingDirection": "j-", "ImageOrientationPatientDICOM": [-1, 0, 0, 0, 1, 0], "ImageOrientationText": "Tra", "InPlanePhaseEncodingDirectionDICOM": "COL", "ConversionSoftware": "dcm2niix", "ConversionSoftwareVersion": "v1.0.20211006", "Dcm2bidsVersion": "2.1.4"}
+{
+  "Modality": "MR",
+  "MagneticFieldStrength": 7,
+  "ImagingFrequency": 297.2,
+  "Manufacturer": "Siemens",
+  "ManufacturersModelName": "Investigational_Device_7T",
+  "InstitutionName": "Hospital",
+  "InstitutionalDepartmentName": "Department",
+  "InstitutionAddress": "Street StreetNo,City,District,CA,ZIP",
+  "DeviceSerialNumber": "79017",
+  "StationName":"AWP79017",
+  "BodyPartExamined": "CSPINE",
+  "PatientPosition": "HFS",
+  "ProcedureStepDescription": "Development^Dr. Cohen-Adad",
+  "SoftwareVersions": "syngo MR E12",
+  "MRAcquisitionType": "2D",
+  "SeriesDescription": "standard_tra",
+  "ProtocolName": "standard_tra",
+  "ScanningSequence": "GR",
+  "SequenceVariant": "SK\\SP",
+  "SequenceName": "*tfl2d1_16",
+  "SeriesNumber": 53,
+  "AcquisitionTime": "12:16:59.472500",
+  "AcquisitionNumber": 1,
+  "ImageComments": "Complex uncombined B1+ map (nT/V)",
+  "SliceThickness": 7,
+  "SpacingBetweenSlices": 14,
+  "SAR": 0.00443249,
+  "TablePosition": [
+    0,
+    0,
+    0	],
+  "EchoTime": 0.00153,
+  "RepetitionTime": 3.76,
+  "SpoilingState": true,
+  "FlipAngle": 5,
+  "PartialFourier": 1,
+  "BaseResolution": 64,
+  "ShimSetting": [133, -20, 10, -75, 9, -147, -112, -224],
+  "TxRefAmp": 400,
+  "PhaseResolution": 1,
+  "ReceiveCoilName": "NP11_ACDC_SPINE",
+  "ReceiveCoilActiveElements": "1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H;1H",
+  "PulseSequenceDetails": "%SiemensSeq%\\tfl_rfmap",
+  "RefLinesPE": 16,
+  "CoilCombinationMethod": "Sum of Squares",
+  "ConsistencyInfo": "N4_VE12U_LATEST_20181126",
+  "MatrixCoilMode": "GRAPPA",
+  "MultibandAccelerationFactor": 5,
+  "PercentPhaseFOV": 68.75,
+  "PercentSampling": 100,
+  "PhaseEncodingSteps": 44,
+  "AcquisitionMatrixPE": 44,
+  "ReconMatrixPE": 44,
+  "ParallelReductionFactorInPlane": 2,
+  "PixelBandwidth": 440,
+  "DwellTime": 1.78e-05,
+  "PhaseEncodingDirection": "j-",
+  "ImageOrientationPatientDICOM": [-1, 0, 0, 0, 1, 0],
+  "ImageOrientationText": "Tra",
+  "InPlanePhaseEncodingDirectionDICOM": "COL",
+  "ConversionSoftware": "",
+  "ConversionSoftwareVersion": "",
+  "Dcm2bidsVersion": ""
+}