adultPADE

Examination of population structure and locus-environmental associations in adult summer flounder: Genomic signatures of environmental selection despite near‐panmixia in summer flounder by Hoey & Pinsky (2018)

Data

Raw sequencing reads have been archived in the NCBI Sequence Read Archive (SRA) database (Acc. No. SRA SRP150953). Other data and files associated with this study are available at Dryad Digital Repository: https://doi.org/10.5061/dryad.c6p8q62.

Code

• PCA_IBD_remake232.R: PCA and isolation by distance
• outliersnps.R: Identification of outlier loci using BayEnv2 and redundancy analysis (RDA))
• outliersnps_randomization.R: Sensitivity analyses for BayEnv2- and RDA-identified outlier loci
• venn_diagram.R: Venn diagram to visualize locus-environmental associations
• all241/local_adaptation_241.R: Outlier analyses for additional fish not included in manuscript