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Build - Sep 2024 (second iteration) (#653)
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@twhetzel
twhetzel authored Sep 12, 2024
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2 changes: 1 addition & 1 deletion docs/metrics/doid.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/doid.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/doid.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/gard.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/gard.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/gard.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10cm.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/icd10cm.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/icd10cm.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10who.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/icd10who.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/icd10who.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd11foundation.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/icd11foundation.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/icd11foundation.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/ncit.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/ncit.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/ncit.owl

### Entities and axioms

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20 changes: 10 additions & 10 deletions docs/metrics/omim.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/omim.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/omim.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 19 |
| Axioms | 354395 |
| Logical axioms | 26211 |
| Classes | 22954 |
| Axioms | 355487 |
| Logical axioms | 26217 |
| Classes | 22957 |
| Object properties | 7 |
| Data properties | 0 |
| Individuals | 0 |
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| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 305207 |
| AnnotationAssertion | 306290 |
| SubAnnotationPropertyOf | 1 |
| Declaration | 22976 |
| SubClassOf | 26211 |
| Declaration | 22979 |
| SubClassOf | 26217 |


#### Entity namespaces: axiom counts by namespace

| Metric | Value |
| ------ | ----- |
| prefix_unknown | 21512 |
| prefix_unknown | 21515 |
| oboInOwl | 4 |
| owl | 2 |
| xsd | 1 |
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| Metric | Value |
| ------ | ----- |
| Class | 75366 |
| ObjectSomeValuesFrom | 21258 |
| Class | 75381 |
| ObjectSomeValuesFrom | 21262 |


More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).
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2 changes: 1 addition & 1 deletion docs/metrics/ordo.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-06/ordo.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-09-12/ordo.owl

### Entities and axioms

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4 changes: 2 additions & 2 deletions docs/reports/migrate.md
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| Ontology | Tot |
|:------------------------------------------------|:------|
| [GARD](./migrate_gard.md) | 9,370 |
| [OMIM](./migrate_omim.md) | 6 |
| [DOID](./migrate_doid.md) | 53 |
| [ICD11FOUNDATION](./migrate_icd11foundation.md) | 4,594 |
| [ORDO](./migrate_ordo.md) | 22 |
| [NCIT](./migrate_ncit.md) | 2,209 |
| [ORDO](./migrate_ordo.md) | 13 |
| [ICD10WHO](./migrate_icd10who.md) | 119 |
| [ICD10CM](./migrate_icd10cm.md) | 1,892 |
| [OMIM](./migrate_omim.md) | 1 |

### Codebook
`Ontology`: Name of ontology
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13 changes: 4 additions & 9 deletions docs/reports/migrate_omim.md
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[Interactive FlatGithub table](https://flatgithub.com/monarch-initiative/mondo-ingest?filename=src/ontology/slurp/omim.tsv)

### Migratable terms
| mondo_id | mondo_label | xref | xref_source | original_label | definition | parents |
|:--------------|:--------------------------------------------------------------------------------------------------|:---------------------|:---------------------------|:--------------------------------------------------------------------------------------------------|:--------------|:--------------|
| ID | LABEL | A oboInOwl:hasDbXref | >A oboInOwl:source SPLIT=| | | A IAO:0000115 | SC % |
| MONDO:0975705 | otofacial neurodevelopmental syndrome | OMIM:620910 | MONDO:equivalentTo | otofacial neurodevelopmental syndrome | | |
| MONDO:0975745 | neurodevelopmental disorder with characteristic facial and ectodermal features and tetraparesis 1 | OMIM:620888 | MONDO:equivalentTo | neurodevelopmental disorder with characteristic facial and ectodermal features and tetraparesis 1 | | |
| MONDO:0975746 | spastic paraplegia 92, autosomal recessive | OMIM:620911 | MONDO:equivalentTo | spastic paraplegia 92, autosomal recessive | | MONDO:0019064 |
| MONDO:0975747 | spermatogenic failure 95 | OMIM:620917 | MONDO:equivalentTo | spermatogenic failure 95 | | MONDO:0004983 |
| MONDO:0975748 | parkinson disease 26, autosomal dominant, susceptibility to | OMIM:620923 | MONDO:equivalentTo | parkinson disease 26, autosomal dominant, susceptibility to | | MONDO:0005180 |
| MONDO:0975749 | immunodeficiency 125 | OMIM:620926 | MONDO:equivalentTo | immunodeficiency 125 | | MONDO:0021094 |
| mondo_id | mondo_label | xref | xref_source | original_label | definition | parents |
|:--------------|:----------------------------------------|:---------------------|:---------------------------|:----------------------------------------|:--------------|:--------------|
| ID | LABEL | A oboInOwl:hasDbXref | >A oboInOwl:source SPLIT=| | | A IAO:0000115 | SC % |
| MONDO:0975761 | immunodeficiency 126, susceptibility to | OMIM:620931 | MONDO:equivalentTo | immunodeficiency 126, susceptibility to | | MONDO:0021094 |
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