Dirrty script to run mq on my VM machine: mqaprna_dev_remote.sh

mmagnus · Jun 12, 2021 · 93b0bbd · 93b0bbd
1 parent f9a7732
commit 93b0bbd
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/rna_tools/tools/mq/mqaprna_dev_remote.sh b/rna_tools/tools/mq/mqaprna_dev_remote.sh
@@ -0,0 +1,5 @@
+folder=job`openssl rand -hex 12`
+ssh mq mkdir $folder
+rsync --delete --include '*.pdb' --exclude="*" -rv $1/* mq:$folder
+ssh mq "cd $folder && /home/mqapRNA/mqaprna_env/mqapRNA/main/mqaprna * -o mq.csv"
+rsync -r  --exclude='*.pdb'  --exclude='.csvsort*'  mq:$folder/ $1