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Merge pull request #132 from schymane/master
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Updating Zenodo URLs
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@sneumann
sneumann authored Nov 16, 2023
2 parents 3447fc6 + b81dcfb commit 24b5e13
Showing 1 changed file with 21 additions and 21 deletions.
42 changes: 21 additions & 21 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -25,49 +25,49 @@ RUN set -eux; \

# RUN wget -q -O- https://msbi.ipb-halle.de/~sneumann/file_databases.tgz | tar -C / -xzf -
RUN mkdir -p /vol/file_databases; cd /vol/file_databases && \
wget -q https://zenodo.org/record/3548461/files/NORMANSusDat_20Nov2019.csv && \
wget -q https://zenodo.org/records/3548461/files/NORMANSusDat_20Nov2019.csv && \
touch NORMANSusDat_20Nov2019.csv && \
wget -q https://zenodo.org/record/3520106/files/NPAtlas_Aug2019.csv && \
wget -q https://zenodo.org/records/3520106/files/NPAtlas_Aug2019.csv && \
touch NPAtlas_Aug2019.csv && \
wget -q https://zenodo.org/record/3364464/files/CompTox_07March19_SmokingMetaData.csv && \
wget -q https://zenodo.org/records/3364464/files/CompTox_07March19_SmokingMetaData.csv && \
touch CompTox_07March19_SmokingMetaData.csv && \
wget -q https://zenodo.org/record/6475906/files/CompTox_07March19_SelectMetaData.csv && \
wget -q https://zenodo.org/records/6475906/files/CompTox_07March19_SelectMetaData.csv && \
touch CompTox_07March19_SelectMetaData.csv && \
wget -q https://zenodo.org/record/3472781/files/CompTox_07March19_WWMetaData.csv && \
wget -q https://zenodo.org/records/3472781/files/CompTox_07March19_WWMetaData.csv && \
touch CompTox_07March19_WWMetaData.csv && \
wget -q https://zenodo.org/record/3541624/files/Zebrafish_13Nov2019_Beta.csv && \
wget -q https://zenodo.org/records/3541624/files/Zebrafish_13Nov2019_Beta.csv && \
touch Zebrafish_13Nov2019_Beta.csv && \
wget -q https://zenodo.org/record/3735703/files/EColiMDB_11Nov2019.csv && \
wget -q https://zenodo.org/records/3735703/files/EColiMDB_11Nov2019.csv && \
touch EColiMDB_11Nov2019.csv && \
wget -q https://zenodo.org/record/3434579/files/YMDB2_17Sept2019.csv && \
wget -q https://zenodo.org/records/3434579/files/YMDB2_17Sept2019.csv && \
touch YMDB2_17Sept2019.csv && \
wget -q https://zenodo.org/record/3403530/files/WormJam_10Sept19.csv && \
wget -q https://zenodo.org/records/3403530/files/WormJam_10Sept19.csv && \
touch WormJam_10Sept19.csv && \
wget -q https://zenodo.org/record/3375500/files/HMDB4_23Aug19.csv && \
wget -q https://zenodo.org/records/3375500/files/HMDB4_23Aug19.csv && \
touch HMDB4_23Aug19.csv

RUN cd /vol/file_databases && \
wget -q https://zenodo.org/record/3564602/files/BloodExposomeDB_03Dec2019.csv && \
wget -q https://zenodo.org/records/3564602/files/BloodExposomeDB_03Dec2019.csv && \
touch BloodExposomeDB_03Dec2019.csv && \
wget -q https://zenodo.org/record/3957497/files/HBM4EU_CECscreen_MF_1Jul2020_plusTPs.csv && \
wget -q https://zenodo.org/records/3957497/files/HBM4EU_CECscreen_MF_1Jul2020_plusTPs.csv && \
touch HBM4EU_CECscreen_MF_1Jul2020_plusTPs.csv && \
wget -q https://zenodo.org/record/3957497/files/HBM4EU_CECscreen_MF_1Jul2020.csv && \
wget -q https://zenodo.org/records/3957497/files/HBM4EU_CECscreen_MF_1Jul2020.csv && \
touch HBM4EU_CECscreen_MF_1Jul2020.csv && \
wget -q https://zenodo.org/record/4456208/files/PubChemLite_01Jan2021_exposomics_CCSbase.csv && \
wget -q https://zenodo.org/records/4456208/files/PubChemLite_01Jan2021_exposomics_CCSbase.csv && \
touch PubChemLite_01Jan2021_exposomics_CCSbase.csv && \
wget -q https://zenodo.org/record/4432124/files/PubChemLite_01Jan2021_exposomics.csv && \
wget -q https://zenodo.org/records/4432124/files/PubChemLite_01Jan2021_exposomics.csv && \
touch PubChemLite_01Jan2021_exposomics.csv && \
wget -q https://zenodo.org/record/6474542/files/OntoChem_PFAS_Patents_20220420.csv && \
wget -q https://zenodo.org/records/6474542/files/OntoChem_PFAS_Patents_20220420.csv && \
touch OntoChem_PFAS_Patents_20220420.csv && \
wget -q https://zenodo.org/record/6474542/files/OntoChem_PFAS_CORE_20220420.csv && \
wget -q https://zenodo.org/records/6474542/files/OntoChem_PFAS_CORE_20220420.csv && \
touch OntoChem_PFAS_CORE_20220420.csv && \
wget -q https://zenodo.org/record/7922070/files/CyanoMetDB_v02_2023_MetFrag.csv && \
wget -q https://zenodo.org/records/7922070/files/CyanoMetDB_v02_2023_MetFrag.csv && \
touch CyanoMetDB_v02_2023_MetFrag.csv && \
wget -q https://zenodo.org/record/7750267/files/PubChem_OECDPFAS_largerPFASparts_20230319.csv && \
wget -q https://zenodo.org/records/7750267/files/PubChem_OECDPFAS_largerPFASparts_20230319.csv && \
touch PubChem_OECDPFAS_largerPFASparts_20230319.csv && \
wget -q https://zenodo.org/record/5336447/files/COCONUT4MetFrag_april.csv && \
wget -q https://zenodo.org/records/5336447/files/COCONUT4MetFrag_april.csv && \
touch COCONUT4MetFrag_april.csv && \
wget -q https://zenodo.org/record/8144127/files/LIPIDMAPS_20230712.csv && \
wget -q https://zenodo.org/records/8144127/files/LIPIDMAPS_20230712.csv && \
touch LIPIDMAPS_20230712.csv && \
wget -q https://zenodo.org/records/10126889/files/PubChemLite_exposomics_20231027.csv && \
touch PubChemLite_exposomics_20231027.csv
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