Fixed
- add cram/crai files to input list (assets/schema_input.json)
- add only a warn about the indices does not exists in converttovcf.json (bin/convertToStdVCF.py)
- change default arg for ENSEMBL VEP (conf/modules.config)
- set TMPDIR to working dir (modules/local/check_if_corrupted.nf)
- edit nextflow version to latest (nextflow.config)