slim
rawDiag version 0.0.38
Thank you for your interest in the rawDiag package.
please use the build package.
If you accept the Thermo License agreement
https://github.com/fgcz/rawDiag/blob/master/inst/docker/ThermoRawFileReader/RawFileReaderLicense.doc
Install
1. System Requirements
a Windows/Linux/MacOSX x64 platform
1.1 .NET Framework and R
- https://www.mono-project.com/ (>4.0.22) for (Linux and MacOSX)
- .NET Framework 4.5.1 or higher (Windows)
- R (>4.0);
- U.S. language setting on windows/linux/apple see issue 33
You can download and install the current R package.
run R (>= 4.0) and type
# install required packages
pkgs <- c('dplyr', 'hexbin', 'protViz', 'RSQLite', 'scales', 'tidyr', 'tidyverse', 'shiny')
pkgs <- pkgs[(!pkgs %in% unique(installed.packages()[,'Package']))]
if(length(pkgs) > 0){install.packages(pkgs)}
install rawDiag
install.packages('http://fgcz-ms.uzh.ch/~cpanse/rawDiag_0.0.38.tar.gz', repo=NULL)
it should run out of the box. A possible first code snippet is below
library(rawDiag)
(rawfile <- file.path(path.package(package = 'rawDiag'), 'extdata', 'sample.raw'))
system.time(RAW <- read.raw(file = rawfile))
dim(RAW)
summary(RAW)
PlotScanFrequency(RAW)
# read the help page
browseVignettes("rawDiag")
After Install please send us an Email, SUBJECT rawDiag package.
What kind of instrument data do you use?
If you still have problems, please let us know via Email, SUBJECT request help rawDiag package.
Output of R's function sessionInfo()
New features
-
removed data used in our initial JPR publication
-
refactored
read.raw.info