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@epiverse-trace

Epiverse-TRACE

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 43 4

  2. epiparameter epiparameter Public

    R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

    R 33 11

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 17 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 3

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 3

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 12 1

Repositories

Showing 10 of 59 repositories
  • epiparameter Public

    R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

    epiverse-trace/epiparameter’s past year of commit activity
    R 33 11 52 (3 issues need help) 1 Updated Jan 2, 2025
  • superspreading Public

    Estimation of individual level variation in transmission

    epiverse-trace/superspreading’s past year of commit activity
    R 4 2 7 0 Updated Jan 2, 2025
  • epiparameterDB Public

    Database of epidemiological parameters

    epiverse-trace/epiparameterDB’s past year of commit activity
    R 1 CC0-1.0 1 0 2 Updated Jan 2, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 3 3 10 (1 issue needs help) 2 Updated Jan 2, 2025
  • safeframe Public

    Tagging, validating, and safeguarding data to help harden data pipelines.

    epiverse-trace/safeframe’s past year of commit activity
    R 0 0 8 3 Updated Jan 2, 2025
  • packagetemplate Public template

    Template of an R package with standard Epiverse-TRACE automation

    epiverse-trace/packagetemplate’s past year of commit activity
    R 7 4 14 (2 issues need help) 4 Updated Jan 1, 2025
  • epiparameterDashboard Public

    Explore the database of epidemiological parameters provided by the {epiparameterDB} package

    epiverse-trace/epiparameterDashboard’s past year of commit activity
    R 0 0 1 3 Updated Jan 1, 2025
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 1 0 0 0 Updated Jan 1, 2025
  • finalsize Public

    R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

    epiverse-trace/finalsize’s past year of commit activity
    R 11 7 17 (3 issues need help) 2 Updated Jan 1, 2025
  • vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    epiverse-trace/vaccineff’s past year of commit activity
    R 16 3 1 (1 issue needs help) 1 Updated Jan 1, 2025
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