Update src/biotite/structure/bonds.pyx

Co-authored-by: Patrick Kunzmann <[email protected]>
biotite-dev · Dec 10, 2024 · 9830bee · 9830bee
1 parent 816849d
commit 9830bee
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/src/biotite/structure/bonds.pyx b/src/biotite/structure/bonds.pyx
@@ -1647,7 +1647,11 @@ def connect_via_residue_names(atoms, bint inter_residue=True,
                 res_names[curr_start_i], {}
             )
 
-        atom_names_in_res = atom_names[curr_start_i : next_start_i]
+        std_name_mapping = get_std_atom_names(res_names[curr_start_i])
+        atom_names_in_res = {
+            std_name_mapping[atom_name] for atom_name
+            in atom_names[curr_start_i : next_start_i]
+        }
 
         # Check if we should use alternative atom names
         std_atom_ids = get_from_ccd(