Fix failing examples in gallery #671
test_and_deploy.yml
on: pull_request
Build CCD and wheel for reusing it in several CI jobs
4m 29s
Generate wheels matrix
9s
Check code style
12s
Build source distribution
25s
Test interfaces to databases and applications
3m 15s
Test interface to Muscle 5
53s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
0s
Upload package to GitHub Releases & PyPI
0s
Annotations
15 errors and 19 warnings
Test interfaces to databases and applications
Process completed with exit code 1.
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Build & Test (cp312-win_amd64, windows-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp311-win_amd64, windows-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp310-win_amd64, windows-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp313-win_amd64, windows-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp311-macosx_x86_64, macos-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build documentation
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build documentation
The operation was canceled.
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Build & Test (cp312-macosx_x86_64, macos-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp313-macosx_x86_64, macos-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Build & Test (cp310-macosx_x86_64, macos-latest)
Canceling since a higher priority waiting request for 'CI & CD-docs' exists
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Generate wheels matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Check code style
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build CCD and wheel for reusing it in several CI jobs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Upload CCD to GitHub Releases
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Build source distribution
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Test interface to Muscle 5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
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Test interfaces to databases and applications
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
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Test interfaces to databases and applications
warning libmamba [libuuid-1.41.5-h5eee18b_0] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Run benchmarks
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Build documentation
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
Build documentation
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
Build documentation
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
Build documentation
warning libmamba [libuuid-1.41.5-h5eee18b_0] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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ccd
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internal-build
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release-cp310-macosx_arm64
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release-cp311-macosx_arm64
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release-cp312-macosx_arm64
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release-cp313-macosx_arm64
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release-sdist
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