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Add support for space group information when reading and writing pdb files #643

Add support for space group information when reading and writing pdb files

Add support for space group information when reading and writing pdb files #643

Re-run triggered December 12, 2024 10:43
Status Failure
Total duration 32m 52s
Artifacts 20

test_and_deploy.yml

on: pull_request
Build CCD and wheel for reusing it in several CI jobs
12m 17s
Build CCD and wheel for reusing it in several CI jobs
Generate wheels matrix
10s
Generate wheels matrix
Check code style
11s
Check code style
Build documentation
4m 37s
Build documentation
Build source distribution
24s
Build source distribution
Test interfaces to databases and applications
20m 7s
Test interfaces to databases and applications
Test interface to Muscle 5
1m 0s
Test interface to Muscle 5
Run benchmarks
5m 35s
Run benchmarks
Upload CCD to GitHub Releases
9s
Upload CCD to GitHub Releases
Matrix: Build & Test
Upload documentation to GitHub Releases
8s
Upload documentation to GitHub Releases
Upload package to GitHub Releases & PyPI
0s
Upload package to GitHub Releases & PyPI
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1 error and 19 warnings
Test interfaces to databases and applications
Process completed with exit code 1.
Generate wheels matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Check code style
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build CCD and wheel for reusing it in several CI jobs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Upload CCD to GitHub Releases
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build source distribution
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test interface to Muscle 5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Build documentation
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build documentation
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Run benchmarks
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Upload documentation to GitHub Releases
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test interfaces to databases and applications
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.

Artifacts

Produced during runtime
Name Size
ccd Expired
33 MB
documentation Expired
74.2 MB
internal-build Expired
51.1 MB
release-cp310-macosx_arm64 Expired
36.4 MB
release-cp310-macosx_x86_64 Expired
36.6 MB
release-cp310-manylinux_x86_64 Expired
49.2 MB
release-cp310-win_amd64 Expired
36.4 MB
release-cp311-macosx_arm64 Expired
36.4 MB
release-cp311-macosx_x86_64 Expired
36.6 MB
release-cp311-manylinux_x86_64 Expired
50.1 MB
release-cp311-win_amd64 Expired
36.4 MB
release-cp312-macosx_arm64 Expired
36.4 MB
release-cp312-macosx_x86_64 Expired
36.6 MB
release-cp312-manylinux_x86_64 Expired
51.8 MB
release-cp312-win_amd64 Expired
36.3 MB
release-cp313-macosx_arm64 Expired
36.4 MB
release-cp313-macosx_x86_64 Expired
36.6 MB
release-cp313-manylinux_x86_64 Expired
51.7 MB
release-cp313-win_amd64 Expired
36.3 MB
release-sdist Expired
33.5 MB