update docs before release

aquariumbio · Sep 21, 2018 · a0a3e05 · a0a3e05
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diff --git a/README.rst b/README.rst
@@ -1,7 +1,8 @@
 Trident: Aquarium API Scripting
 ===============================
 
-|CircleCI| |PyPI version|
+`CircleCI <https://circleci.com/gh/klavinslab/trident/tree/master>`__
+`PyPI version <https://badge.fury.io/py/pydent>`__
 
 Trident is the python API scripting for Aquarium.
 
@@ -101,8 +102,3 @@ Available nested relationships
 
    primer_type = mysession.SampleType.find(1)
    print(primer_type.relationships)
-
-.. |CircleCI| image:: https://circleci.com/gh/klavinslab/trident/tree/master.svg?style=svg&circle-token=88677c59698d55a127a080cba9ca025cf8072f6c
-   :target: https://circleci.com/gh/klavinslab/trident/tree/master
-.. |PyPI version| image:: https://badge.fury.io/py/pydent.svg
-   :target: https://badge.fury.io/py/pydent
diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 7dec1da3f41b1644c8dac47c5e900cef
+config: 888b6eac69eb9de5a452ee5526b9e88d
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -6,14 +6,13 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Overview: module code &#8212; Trident 0.0.33a documentation</title>
+    <title>Overview: module code &#8212; Trident 0.0.33 documentation</title>
     <link rel="stylesheet" href="../_static/sphinxdoc.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
     <script type="text/javascript" src="../_static/jquery.js"></script>
     <script type="text/javascript" src="../_static/underscore.js"></script>
     <script type="text/javascript" src="../_static/doctools.js"></script>
-    <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" /> 
   </head><body>
@@ -26,22 +25,22 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../index.html">Trident 0.0.33a documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="../index.html">Trident 0.0.33 documentation</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper"><p class="sidebar-subtitle">
     <a href="../index.html">
         <h1>Trident</h1>
-        <h2>0.0.33a</h2>
+        <h2>0.0.33</h2>
     </a>
 </p>
 
 <p>
     Trident is a python scripting API wrapper for Aquarium. With Trident,
     you can create python scripts and apps that mine data, create samples,
     submit laboratory protocols, and more. You are looking at documentation
-    for version <b>0.0.33a</b>.
+    for version <b>0.0.33</b>.
 </p>
 <div>
     <a href="https://circleci.com/gh/klavinslab/trident/tree/master"><img src="https://circleci.com/gh/klavinslab/trident.svg?style=svg" alt="build status"></a>
@@ -96,12 +95,12 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../index.html">Trident 0.0.33a documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="../index.html">Trident 0.0.33 documentation</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">
         &#169; Copyright 2017, University of Washington.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.0.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.5.
     </div>
   </body>
 </html>
diff --git a/docs/_modules/marshmallow/fields.html b/docs/_modules/marshmallow/fields.html
@@ -6,14 +6,13 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>marshmallow.fields &#8212; Trident 0.0.33a documentation</title>
+    <title>marshmallow.fields &#8212; Trident 0.0.33 documentation</title>
     <link rel="stylesheet" href="../../_static/sphinxdoc.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
     <script type="text/javascript" src="../../_static/jquery.js"></script>
     <script type="text/javascript" src="../../_static/underscore.js"></script>
     <script type="text/javascript" src="../../_static/doctools.js"></script>
-    <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
   </head><body>
@@ -26,23 +25,23 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper"><p class="sidebar-subtitle">
     <a href="../../index.html">
         <h1>Trident</h1>
-        <h2>0.0.33a</h2>
+        <h2>0.0.33</h2>
     </a>
 </p>
 
 <p>
     Trident is a python scripting API wrapper for Aquarium. With Trident,
     you can create python scripts and apps that mine data, create samples,
     submit laboratory protocols, and more. You are looking at documentation
-    for version <b>0.0.33a</b>.
+    for version <b>0.0.33</b>.
 </p>
 <div>
     <a href="https://circleci.com/gh/klavinslab/trident/tree/master"><img src="https://circleci.com/gh/klavinslab/trident.svg?style=svg" alt="build status"></a>
@@ -1389,13 +1388,13 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">
         &#169; Copyright 2017, University of Washington.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.0.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.5.
     </div>
   </body>
 </html>
diff --git a/docs/_modules/marshmallow/schema.html b/docs/_modules/marshmallow/schema.html
@@ -6,14 +6,13 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>marshmallow.schema &#8212; Trident 0.0.33a documentation</title>
+    <title>marshmallow.schema &#8212; Trident 0.0.33 documentation</title>
     <link rel="stylesheet" href="../../_static/sphinxdoc.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
     <script type="text/javascript" src="../../_static/jquery.js"></script>
     <script type="text/javascript" src="../../_static/underscore.js"></script>
     <script type="text/javascript" src="../../_static/doctools.js"></script>
-    <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
   </head><body>
@@ -26,23 +25,23 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper"><p class="sidebar-subtitle">
     <a href="../../index.html">
         <h1>Trident</h1>
-        <h2>0.0.33a</h2>
+        <h2>0.0.33</h2>
     </a>
 </p>
 
 <p>
     Trident is a python scripting API wrapper for Aquarium. With Trident,
     you can create python scripts and apps that mine data, create samples,
     submit laboratory protocols, and more. You are looking at documentation
-    for version <b>0.0.33a</b>.
+    for version <b>0.0.33</b>.
 </p>
 <div>
     <a href="https://circleci.com/gh/klavinslab/trident/tree/master"><img src="https://circleci.com/gh/klavinslab/trident.svg?style=svg" alt="build status"></a>
@@ -1050,13 +1049,13 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">
         &#169; Copyright 2017, University of Washington.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.0.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.5.
     </div>
   </body>
 </html>
diff --git a/docs/_modules/pydent/aqhttp.html b/docs/_modules/pydent/aqhttp.html
@@ -6,14 +6,13 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>pydent.aqhttp &#8212; Trident 0.0.33a documentation</title>
+    <title>pydent.aqhttp &#8212; Trident 0.0.33 documentation</title>
     <link rel="stylesheet" href="../../_static/sphinxdoc.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
     <script type="text/javascript" src="../../_static/jquery.js"></script>
     <script type="text/javascript" src="../../_static/underscore.js"></script>
     <script type="text/javascript" src="../../_static/doctools.js"></script>
-    <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
   </head><body>
@@ -26,23 +25,23 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper"><p class="sidebar-subtitle">
     <a href="../../index.html">
         <h1>Trident</h1>
-        <h2>0.0.33a</h2>
+        <h2>0.0.33</h2>
     </a>
 </p>
 
 <p>
     Trident is a python scripting API wrapper for Aquarium. With Trident,
     you can create python scripts and apps that mine data, create samples,
     submit laboratory protocols, and more. You are looking at documentation
-    for version <b>0.0.33a</b>.
+    for version <b>0.0.33</b>.
 </p>
 <div>
     <a href="https://circleci.com/gh/klavinslab/trident/tree/master"><img src="https://circleci.com/gh/klavinslab/trident.svg?style=svg" alt="build status"></a>
@@ -342,13 +341,13 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">
         &#169; Copyright 2017, University of Washington.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.0.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.5.
     </div>
   </body>
 </html>
diff --git a/docs/_modules/pydent/aqsession.html b/docs/_modules/pydent/aqsession.html
@@ -6,14 +6,13 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>pydent.aqsession &#8212; Trident 0.0.33a documentation</title>
+    <title>pydent.aqsession &#8212; Trident 0.0.33 documentation</title>
     <link rel="stylesheet" href="../../_static/sphinxdoc.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="../../" src="../../_static/documentation_options.js"></script>
     <script type="text/javascript" src="../../_static/jquery.js"></script>
     <script type="text/javascript" src="../../_static/underscore.js"></script>
     <script type="text/javascript" src="../../_static/doctools.js"></script>
-    <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
   </head><body>
@@ -26,23 +25,23 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper"><p class="sidebar-subtitle">
     <a href="../../index.html">
         <h1>Trident</h1>
-        <h2>0.0.33a</h2>
+        <h2>0.0.33</h2>
     </a>
 </p>
 
 <p>
     Trident is a python scripting API wrapper for Aquarium. With Trident,
     you can create python scripts and apps that mine data, create samples,
     submit laboratory protocols, and more. You are looking at documentation
-    for version <b>0.0.33a</b>.
+    for version <b>0.0.33</b>.
 </p>
 <div>
     <a href="https://circleci.com/gh/klavinslab/trident/tree/master"><img src="https://circleci.com/gh/klavinslab/trident.svg?style=svg" alt="build status"></a>
@@ -219,13 +218,13 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33a documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Trident 0.0.33 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">
         &#169; Copyright 2017, University of Washington.
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.0.
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.7.5.
     </div>
   </body>
 </html>