Merge pull request #221 from amarquand/dev

Dev
amarquand · Nov 22, 2024 · 89f4441 · 89f4441
2 parents 8d83c79 + b70df61
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diff --git a/README.md b/README.md
@@ -1,5 +1,7 @@
 # Predictive Clinical Neuroscience Toolkit
-[![Gitter](https://badges.gitter.im/predictive-clinical-neuroscience/community.svg)](https://gitter.im/predictive-clinical-neuroscience/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) [![Documentation Status](https://readthedocs.org/projects/pcntoolkit/badge/?version=latest)](https://pcntoolkit.readthedocs.io/en/latest/?badge=latest) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5207839.svg)](https://doi.org/10.5281/zenodo.5207839)
+[![Documentation Status](https://readthedocs.org/projects/pcntoolkit/badge/?version=latest)](https://pcntoolkit.readthedocs.io/en/latest/?badge=latest) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5207839.svg)](https://doi.org/10.5281/zenodo.5207839)
+
+[Github](https://github.com/amarquand/PCNtoolkit)
 
 
 Predictive Clinical Neuroscience software toolkit (formerly nispat). 
@@ -40,6 +42,18 @@ python -m pip install .
 python -c "import pcntoolkit as pk;print(pk.__file__)"
 ```
 
+### Troubleshooting
+
+#### Nutpie installation failure
+On some older architectures, the installation of nutpie may fail due to a missing Rust compiler. If this is the case, you can install it manually using conda prior to installing PCNtoolkit:
+
+```
+# install nutpie
+conda install -c conda-forge nutpie
+# install PCNtoolkit
+pip install pcntoolkit
+```
+
 ## Alternative installation (on a shared resource)
 
 #### Make sure conda is available on the system.

diff --git a/doc/source/pages/FAQs.rst b/doc/source/pages/FAQs.rst
@@ -10,4 +10,4 @@ The PCNtoolkit developers have written a protocol for how to run a normative mod
 Rutherford, S., Kia, S. M., Wolfers, T., ... Beckmann, C. F., & Marquand, A. F. (2022). The Normative Modeling Framework for Computational Psychiatry. Nature Protocols. https://www.nature.com/articles/s41596-022-00696-5.
 
 
-Feel free to interact with the normative modeling community and browse the existing questions/answers on `Gitter <https://gitter.im/predictive-clinical-neuroscience/community?source=orgpage/>`__
+Feel free to interact with the normative modeling community and browse the existing questions/answers on `Github <https://github.com/amarquand/PCNtoolkit>`__
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Expand Up		@@ -10,4 +10,4 @@ The PCNtoolkit developers have written a protocol for how to run a normative mod
		Rutherford, S., Kia, S. M., Wolfers, T., ... Beckmann, C. F., & Marquand, A. F. (2022). The Normative Modeling Framework for Computational Psychiatry. Nature Protocols. https://www.nature.com/articles/s41596-022-00696-5.


		Feel free to interact with the normative modeling community and browse the existing questions/answers on `Gitter <https://gitter.im/predictive-clinical-neuroscience/community?source=orgpage/>`__
		Feel free to interact with the normative modeling community and browse the existing questions/answers on `Github <https://github.com/amarquand/PCNtoolkit>`__