Merge pull request #92 from INCATools/rebuild3

Update project artifacts
INCATools · Nov 14, 2024 · 4175e20 · 4175e20
2 parents a6b4779 + 0ed1bf3
commit 4175e20
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Showing 12 changed files with 4,449 additions and 4,279 deletions.
diff --git a/poetry.lock b/poetry.lock
diff --git a/project/excel/kgcl.xlsx b/project/excel/kgcl.xlsx
diff --git a/project/graphql/kgcl.graphql b/project/graphql/kgcl.graphql
@@ -1263,6 +1263,10 @@ type OntologyElement
 
 type OntologySubset
   {
+    id: String!
+    name: String
+    annotationSet: Annotation
+    owlType: OwlTypeEnum
   }
 
 type PlaceUnder
@@ -1616,6 +1620,7 @@ type SynonymReplacement
     language: LanguageTag
     oldValue: String
     newValue: String
+    qualifier: String
     hasTextualDiff: TextualDiff
   }
 

diff --git a/project/jsonld/kgcl.context.jsonld b/project/jsonld/kgcl.context.jsonld
@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-11-12T12:18:11",
+      "generation_date": "2024-11-14T14:12:01",
       "source": "kgcl.yaml"
    },
    "@context": {

diff --git a/project/jsonld/kgcl.jsonld b/project/jsonld/kgcl.jsonld
@@ -759,9 +759,10 @@
       "description": "The qualifier of a change operation",
       "from_schema": "https://w3id.org/kgcl",
       "slot_uri": "http://w3id.org/kgcl/qualifier",
-      "owner": "NewSynonym",
+      "owner": "SynonymReplacement",
       "domain_of": [
-        "NewSynonym"
+        "NewSynonym",
+        "SynonymReplacement"
       ],
       "range": "string",
       "@type": "SlotDefinition"
@@ -935,7 +936,6 @@
         "SubsetMembershipChange"
       ],
       "range": "OntologySubset",
-      "inlined": true,
       "@type": "SlotDefinition"
     },
     {
@@ -2058,7 +2058,6 @@
       "is_usage_slot": true,
       "usage_slot_name": "in_subset",
       "range": "OntologySubset",
-      "inlined": true,
       "@type": "SlotDefinition"
     },
     {
@@ -2077,7 +2076,6 @@
       "is_usage_slot": true,
       "usage_slot_name": "in_subset",
       "range": "OntologySubset",
-      "inlined": true,
       "@type": "SlotDefinition"
     },
     {
@@ -4673,6 +4671,7 @@
         "language",
         "old_value",
         "new_value",
+        "qualifier",
         "has_textual_diff"
       ],
       "slot_usage": {},
@@ -5928,7 +5927,13 @@
       "name": "OntologySubset",
       "definition_uri": "http://w3id.org/kgcl/om/OntologySubset",
       "from_schema": "https://w3id.org/kgcl/ontology",
-      "is_a": "OntologyElement",
+      "is_a": "Node",
+      "slots": [
+        "id",
+        "name",
+        "annotation_set",
+        "owl_type"
+      ],
       "slot_usage": {},
       "class_uri": "http://w3id.org/kgcl/om/OntologySubset",
       "@type": "ClassDefinition"
@@ -5986,9 +5991,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "kgcl.yaml",
-  "source_file_date": "2024-03-04T17:09:27",
-  "source_file_size": 32109,
-  "generation_date": "2024-11-12T12:18:11",
+  "source_file_date": "2024-11-14T14:03:10",
+  "source_file_size": 32125,
+  "generation_date": "2024-11-14T14:12:01",
   "@type": "SchemaDefinition",
   "@context": [
     "project/jsonld/kgcl.context.jsonld",

diff --git a/project/jsonschema/kgcl.schema.json b/project/jsonschema/kgcl.schema.json
@@ -96,15 +96,11 @@
                     "type": "string"
                 },
                 "in_subset": {
-                    "anyOf": [
-                        {
-                            "$ref": "#/$defs/OntologySubset"
-                        },
-                        {
-                            "type": "null"
-                        }
-                    ],
-                    "description": "subset that the element is being placed inside."
+                    "description": "subset that the element is being placed inside.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
                 },
                 "language": {
                     "description": "The language tag of a literal",
@@ -6003,6 +5999,33 @@
         "OntologySubset": {
             "additionalProperties": false,
             "description": "",
+            "properties": {
+                "annotation_set": {
+                    "anyOf": [
+                        {
+                            "$ref": "#/$defs/Annotation"
+                        },
+                        {
+                            "type": "null"
+                        }
+                    ]
+                },
+                "id": {
+                    "type": "string"
+                },
+                "name": {
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "owl_type": {
+                    "$ref": "#/$defs/OwlTypeEnum"
+                }
+            },
+            "required": [
+                "id"
+            ],
             "title": "OntologySubset",
             "type": "object"
         },
@@ -6747,15 +6770,11 @@
                     "type": "string"
                 },
                 "in_subset": {
-                    "anyOf": [
-                        {
-                            "$ref": "#/$defs/OntologySubset"
-                        },
-                        {
-                            "type": "null"
-                        }
-                    ],
-                    "description": "subset that the element is being removed from"
+                    "description": "subset that the element is being removed from",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
                 },
                 "language": {
                     "description": "The language tag of a literal",
@@ -7935,6 +7954,13 @@
                         "null"
                     ]
                 },
+                "qualifier": {
+                    "description": "The qualifier of a change operation",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "see_also": {
                     "type": [
                         "string",