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@AndersenLab

Andersen Lab

Johns Hopkins University

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  1. CAENDR CAENDR Public

    HTML 4 3

Repositories

Showing 10 of 186 repositories
  • Ce_geneAnno-sh Public

    This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.

    AndersenLab/Ce_geneAnno-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 23, 2025
  • variantanno-sh Public

    Shells scripts to run tools (SIFT, VEP, ANNOVAR) to annotate variants in selfing Caenorhabditis WI VCFs

    AndersenLab/variantanno-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 17, 2025
  • CAENDR Public
    AndersenLab/CAENDR’s past year of commit activity
    HTML 4 MIT 3 0 9 Updated Jan 15, 2025
  • wi-gatk Public

    The new GATK-based pipeline for wild isolate C. elegans strains

    AndersenLab/wi-gatk’s past year of commit activity
    Nextflow 1 3 6 0 Updated Jan 15, 2025
  • cellprofiler-nf Public

    A nextflow pipeline to run CellProfiler pipelines on raw images and process output

    AndersenLab/cellprofiler-nf’s past year of commit activity
    Nextflow 1 MIT 2 6 (1 issue needs help) 1 Updated Jan 15, 2025
  • EHP_manuscript Public

    This repository holds data, code, and plots for the Environmental Health Perspectives manuscript written with Dr. Scott Glaberman

    AndersenLab/EHP_manuscript’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 14, 2025
  • pathogenDiscovery-sh Public

    C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

    AndersenLab/pathogenDiscovery-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 6, 2025
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io’s past year of commit activity
    HTML 2 MIT 3 0 2 Updated Jan 3, 2025
  • cv Public

    Andersen Curriculum Vitae

    AndersenLab/cv’s past year of commit activity
    0 1 0 0 Updated Dec 20, 2024
  • alignment-nf Public

    A nextflow pipeline for genome sequences alignment

    AndersenLab/alignment-nf’s past year of commit activity
    Nextflow 1 MIT 0 1 0 Updated Dec 18, 2024
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