-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathschema_bcbio_giab_germline.txt
57 lines (57 loc) · 2.6 KB
/
schema_bcbio_giab_germline.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
root
|-- contigName: string (nullable = true)
|-- start: long (nullable = true)
|-- end: long (nullable = true)
|-- names: array (nullable = true)
| |-- element: string (containsNull = true)
|-- referenceAllele: string (nullable = true)
|-- alternateAlleles: array (nullable = true)
| |-- element: string (containsNull = true)
|-- qual: double (nullable = true)
|-- filters: array (nullable = true)
| |-- element: string (containsNull = true)
|-- splitFromMultiAllelic: boolean (nullable = true)
|-- INFO_platformnames: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_callsetwithotheruniqgenopassing: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_callsetnames: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_AC: array (nullable = true)
| |-- element: integer (containsNull = true)
|-- INFO_varType: string (nullable = true)
|-- INFO_DPSum: integer (nullable = true)
|-- INFO_datasetsmissingcall: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_AN: integer (nullable = true)
|-- INFO_callsets: integer (nullable = true)
|-- INFO_callsetwiththisuniqgenopassing: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_callable: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_difficultregion: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_datasets: integer (nullable = true)
|-- INFO_platformbias: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_platforms: integer (nullable = true)
|-- INFO_arbitrated: string (nullable = true)
|-- INFO_filt: array (nullable = true)
| |-- element: string (containsNull = true)
|-- INFO_datasetnames: array (nullable = true)
| |-- element: string (containsNull = true)
|-- genotypes: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- sampleId: string (nullable = true)
| | |-- conditionalQuality: integer (nullable = true)
| | |-- alleleDepths: array (nullable = true)
| | | |-- element: integer (containsNull = true)
| | |-- phased: boolean (nullable = true)
| | |-- calls: array (nullable = true)
| | | |-- element: integer (containsNull = true)
| | |-- depth: integer (nullable = true)
| | |-- IGT: string (nullable = true)
| | |-- IPS: string (nullable = true)
| | |-- ADALL: array (nullable = true)
| | | |-- element: integer (containsNull = true)
| | |-- PS: integer (nullable = true)