.gitignore

.Rproj.user
.Rproj.user
.Rhistory
.RData
.Ruserdata
.Rapp.history
.DS_Store
analysis/figure
analysis/*png
analysis/*html
analysis/*_cache
analysis/site_libs
data/Cusanovich_2018/processed_data/activity_scores.quantitative.rds
data/Cusanovich_2018/processed_data/master_cicero_conns.rds
data/Buenrostro_2018/processed_data/Buenrostro_2018_binarized.RData
data/Cusanovich_2018/processed_data/Cusanovich_2018_Kidney.RData
scripts/seq_gene.md.gz
output/Buenrostro_2018/binarized/filtered_peaks/fit-Buenrostro2018-binarized-filtered-scd-ex-k=8.rds
output/Buenrostro_2018/binarized/filtered_peaks/fit-Buenrostro2018-binarized-filtered-scd-ex-k=10.rds
output/Buenrostro_2018/binarized/filtered_peaks/de-buenrostro2018-k=10-noshrink.RData
output/Cusanovich_2018/fit-Cusanovich2018-scd-ex-k=13.rds
output/Cusanovich_2018/tissues/fit-Cusanovich2018-Kidney-scd-ex-k=10.rds
output/Cusanovich_2018/tissues/de-cusanovich2018-kidney-k=10-noshrink.RData
output/Cusanovich_2018/tissues/gene-scores-cusanovich2018-kidney-k=10.RData