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Describe the bug
I can't access any Images due to 'No such file or directory error' for the drpall-v2_4_3.fits, even when the file is successfully downloaded and verified to be available.
To Reproduce
Simply run
from marvin.tools.image import Image
im = Image('8567-3704')
Expected behavior
Gives out an error
[Errno 2] No such file or directory: '/root/sas/dr16/manga/spectro/redux/v2_4_3/drpall-v2_4_3.fits'
Full error:
[WARNING]: drpall file not found. Downloading it. (MarvinUserWarning)
Progress: 0%| | 0/1 [00:00<?, ?files/s, n_files=1, n_streams=1]
[WARNING]: drpall file not found. Downloading it. (MarvinUserWarning)
SDSS_ACCESS> Done!
Progress: 0%| | 0/1 [00:00<?, ?files/s, n_files=1, n_streams=1]SDSS_ACCESS> Done!
---------------------------------------------------------------------------
FileNotFoundError Traceback (most recent call last)
<ipython-input-9-fc6de919d3c6> in <module>()
----> 1 im = Image('8567-3704')
10 frames
/usr/local/lib/python3.7/dist-packages/marvin/tools/image.py in __init__(self, input, filename, mangaid, plateifu, mode, data, release, download)
75 raise MarvinError('Images cannot currently be accessed from the db')
76 elif self.data_origin == 'api':
---> 77 self._load_image_from_api()
78
79 # initialize attributes
/usr/local/lib/python3.7/dist-packages/marvin/tools/image.py in _load_image_from_api(self)
170 ''' Load an image from a remote location '''
171
--> 172 filepath = self._getFullPath()
173 response = requests.get(self.url)
174 if not response.ok:
/usr/local/lib/python3.7/dist-packages/marvin/tools/image.py in _getFullPath(self)
132
133 plate, ifu = self.plateifu.split('-')
--> 134 dir3d = self._get_image_dir()
135
136 name = 'mangaimage'
/usr/local/lib/python3.7/dist-packages/marvin/tools/image.py in _get_image_dir(self)
121
122 # get the appropriate image directory
--> 123 is_mastar = target_is_mastar(self.plateifu, drpver=self._drpver)
124 image_dir = 'mastar' if is_mastar else 'stack'
125 return image_dir
/usr/local/lib/python3.7/dist-packages/marvin/utils/general/general.py in target_is_mastar(plateifu, drpver, drpall)
1725 '''
1726
-> 1727 row = get_drpall_row(plateifu, drpver=drpver, drpall=drpall)
1728 return row['srvymode'] == 'APOGEE lead'
1729
/usr/local/lib/python3.7/dist-packages/marvin/utils/general/general.py in get_drpall_row(plateifu, drpver, drpall)
986
987 # get the drpall table
--> 988 drpall_table = get_drpall_table(drpver=drpver, drpall=drpall, hdu='MANGA')
989 in_table = plateifu in drpall_table['plateifu']
990 # check the mastar extension
/usr/local/lib/python3.7/dist-packages/marvin/utils/general/general.py in get_drpall_table(drpver, drpall, hdu)
1768 if hdu not in drpTable[drpver]:
1769 drpall = drpall if drpall else get_drpall_path(drpver=drpver)
-> 1770 data = {hduext: table.Table.read(drpall, hdu=hduext)}
1771 drpTable[drpver].update(data)
1772
/usr/local/lib/python3.7/dist-packages/astropy/table/connect.py in __call__(self, *args, **kwargs)
59 descriptions = kwargs.pop('descriptions', None)
60
---> 61 out = registry.read(cls, *args, **kwargs)
62
63 # For some readers (e.g., ascii.ecsv), the returned `out` class is not
/usr/local/lib/python3.7/dist-packages/astropy/io/registry.py in read(cls, format, cache, *args, **kwargs)
510 try:
511 ctx = get_readable_fileobj(args[0], encoding='binary', cache=cache)
--> 512 fileobj = ctx.__enter__()
513 except OSError:
514 raise
/usr/lib/python3.7/contextlib.py in __enter__(self)
110 del self.args, self.kwds, self.func
111 try:
--> 112 return next(self.gen)
113 except StopIteration:
114 raise RuntimeError("generator didn't yield") from None
/usr/local/lib/python3.7/dist-packages/astropy/utils/data.py in get_readable_fileobj(name_or_obj, encoding, cache, show_progress, remote_timeout, sources, http_headers)
260 timeout=remote_timeout, sources=sources,
261 http_headers=http_headers)
--> 262 fileobj = io.FileIO(name_or_obj, 'r')
263 if is_url and not cache:
264 delete_fds.append(fileobj)
FileNotFoundError: [Errno 2] No such file or directory: '/root/sas/dr16/manga/spectro/redux/v2_4_3/drpall-v2_4_3.fits'
Screenshots
Desktop:
OS: Windows but running in Google Colab, faced the same issue when run on Ubuntu.
Browser: Chrome
The text was updated successfully, but these errors were encountered:
@affanadly I'm not sure but looks like it might be a permissions issue(?). It looks like you're trying to write the SAS contents into /root. If that's a root level system directory, your user running marvin might not have permissions to write files/folders into that place. Can you check your permissions on /root? Or can you try setting the SAS_BASE_DIR environment variable to a new directory inside your user's home directory, or a folder where you have correct permissions. What version of Marvin are you using?
It also looks like you're using a system installation of the Python. These have been known to cause issues. We recommend using a separate Python installation, e.g. from Anaconda or Miniconda.
Describe the bug
I can't access any Images due to 'No such file or directory error' for the drpall-v2_4_3.fits, even when the file is successfully downloaded and verified to be available.
To Reproduce
Simply run
Expected behavior
Gives out an error
[Errno 2] No such file or directory: '/root/sas/dr16/manga/spectro/redux/v2_4_3/drpall-v2_4_3.fits'
Full error:
Screenshots
Desktop:
The text was updated successfully, but these errors were encountered: