You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am using nextflow fargate for batch analysis, I have a pipeline with four steps, and I run it on about 30 samples (a total of 120 jobs)..
The jobs use public docker images from dockerhub and wave(which is mandatory for aws fargate).
I am getting randomly the error(see Program output):
error: nextflow.exception.ProcessException: CannotPullContainerError:
I thought it is related to dockerhub usage limit so I tried to use tower token with dockerhub credentials and it still happen.
I also checked that my personal dockerhub user didnt reach the pull limitation and got:
ratelimit-limit: 200;w=21600
ratelimit-remaining: 196;w=21600
(I have 196 pulls remain for next 6 hours, also its look like it nextflow didn't use my dockerhub credentials because I ran 100 jobs)
I run the pipeline in the past several times (even one time on 15,000 samples) and everything was ok with fargate+wave.
Thanks for your help!
Steps to reproduce the problem
run multiple jobs on aws fargate.
Program output
its look like this:
Jan-19 10:17:10.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: cmpileup (cmpileup SRR7660770); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: CannotPullContainerError: ref pull has been retried 1 time(s): failed to copy: httpReadSeeker: failed open: unexpected status code https://wave.seqera.io/v2/wt/3deb0fa443bf/levanonlab/cmpileup/blobs/sha256:1d71e290059824641352aefb09300471c4c331a29bf5f107cba46eb13a4584cb: 400 Bad Request; workDir: s3://levanon-lab-sambuseq-challenge-common/nextflow_workdir/7_SE_Stranded_75_35S/2b/e65acdc960560d9a6f4681564514d7]
(I upload the .nextflow.log file, and replace my towerAccessToken to @@@ for privacy.)
Bug report
Expected behavior and actual behavior
I am using nextflow fargate for batch analysis, I have a pipeline with four steps, and I run it on about 30 samples (a total of 120 jobs)..
The jobs use public docker images from dockerhub and wave(which is mandatory for aws fargate).
I am getting randomly the error(see Program output):
error: nextflow.exception.ProcessException: CannotPullContainerError:
I thought it is related to dockerhub usage limit so I tried to use tower token with dockerhub credentials and it still happen.
I also checked that my personal dockerhub user didnt reach the pull limitation and got:
ratelimit-limit: 200;w=21600
ratelimit-remaining: 196;w=21600
(I have 196 pulls remain for next 6 hours, also its look like it nextflow didn't use my dockerhub credentials because I ran 100 jobs)
I run the pipeline in the past several times (even one time on 15,000 samples) and everything was ok with fargate+wave.
Thanks for your help!
Steps to reproduce the problem
run multiple jobs on aws fargate.
Program output
its look like this:
Jan-19 10:17:10.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: cmpileup (cmpileup SRR7660770); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: CannotPullContainerError: ref pull has been retried 1 time(s): failed to copy: httpReadSeeker: failed open: unexpected status code https://wave.seqera.io/v2/wt/3deb0fa443bf/levanonlab/cmpileup/blobs/sha256:1d71e290059824641352aefb09300471c4c331a29bf5f107cba46eb13a4584cb: 400 Bad Request; workDir: s3://levanon-lab-sambuseq-challenge-common/nextflow_workdir/7_SE_Stranded_75_35S/2b/e65acdc960560d9a6f4681564514d7]
(I upload the
.nextflow.log
file, and replace my towerAccessToken to @@@ for privacy.).nextflow.log
Environment
The text was updated successfully, but these errors were encountered: