DIAgui v1.4.5

Possibility to use .parquet file + small updates

DIAgui 1.4.3

Added possibility to filter on Quantity.Quality

DIAgui v1.4.2

Added the possibility to filter contaminants from your report in the first tab of the app based on a typed prefix/suffix; added the possibility to filter ids from your data in the 'data visualization and statistics' tab; + other small improvements and bug fixing.
get_bestwind function has been significantly improved. It now takes the precursor mz and not the product mz, allow the user to use a fix overlap and/or a fix window size.
Added the option to plot the static plot iRT vs RT in the app + it now check if your report has too many rows to handle it will ask you if you're sure to plot the interactive plot.

DIAgui v1.4.1

Corrected bugs in heatmap function; handling potential duplicates in the peptide MaxLFQ section of the app; corrected bug in get_iBAQ function; added imputation algorithms from imputLCMD R package; added possibility to use a fix window size in get_bestwind function.

DIAgui v1.4.0

Corrected bugs; checks file when upload in app; added new functions (imputation from mice R package, correlation plot, simple volcano plot, etc.) improved app.

DIAgui v1.3.2

Modified package dependencies in description; when only one sample prevent from dropping data.frame in app and diann_maxlfq.

DIAgui v.1.3.1

Corrected bug in getallseq when protein is not found in swissprot bank; merged pull requests

DIAgui v.1.3.0

Added vignette documentation + possibility to get best PTM q.value on peptide level

DIAgui 1.2.3

Add new function 'validDIA' to see the proportion of valid values; implemented in the app.

DIAgui 1.2.2

Added possibility to visualize only intensity, Top3, iBAQ or all in visualization tab.
--> Updated density, MDS and heatmap function