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RELEASE_NOTES.txt
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medInria 5.0:
- Replace old system of database with new system of data sources:
* Possibility to add new external sources of data, such as Shanoir, PACS, temporary database, SQL-lite retrocompatible with medInria 3/4.
* New data management GUI.
* Clear and simple data source API to create your own source, "via medAbstractDataSource.h".
- Add Windows SDK.
- Remove boost dependency.
- Add Openssl and Git LFS prerequisites to compile.
- Switch to Qt5.15, VTK 9.2.6 (witch fix an issue with fiber file format), and ITK v5.4rc04.
- Clean resources files and switch most of the icons from png to svg files.
- Add theme system with Dark, Grey and Light theme, which can be chosen in Settings menu.
- New notification system.
- New log system.
- New metadata key system: now users can create or customize their own metadata keys throught json files.
- GUI changes to adopt menu paradigm.
- Modernize splash screen.
- Registration workspace: automatic cast of data in LCC and Diffeomorphic toolboxes.
- Enhance memory management of the application to avoid memory leaks.
- Add DicomRT writer.
medInria 4.0:
- INFORMATION: this version of medInria is NOT packaged with Anima plugins. We apologize for the inconvenience, we're working on adding them in a near release.
- PYTHON: An embedded Python interpreter (currently 3.10) has been added. Plugins can create their own bindings (using any generator) to extend the application in Python.
(official bindings to the medInria API will be added soon)
- Fix an incorrect zoom for some data displayed in a view. The zoom is now calculated with x and y dims, and not z
- N4 Bias Correction process can stop now if the user wants to quit the application, it will stop at some algorithm checkpoints
- Reslice toolbox: changing the dimension of spacing parameters does not zoom one of the views
- Paint toolbox: the first click on the view quickly displays the drawing, instead of waiting for the mask to be created
- Update loading window logo at application start, and speed up the start removing text display
- Fix a bug with inrimage data type
- We have done some work to avoid memory leaks to get a more stable application
- Solve some graphical problem with settings widgets
- Add a setting in Browser to deactivate or activate the computation of thumbnail at import. Deactivation uses less RAM, if needed
- Avoid a crash importing wrong version of VTK files
- Fix Paint toolbox widgets when the user switches from Paint/Erase to Magic Wand or clear the view.
- Fix a freeze in PolygonROI toolbox if the user contours outside the image borders.
- Fix the "clear" button to effectivaly clear the view.
- Stop some toolboxes compatible with 3D data if the user is using 4D data.
- Video: default frame rate a 24.
- DICOM: handle if the origin is missing.
- Switch to Fedora 37.
- Switch to Ubuntu 22.
- PolygonROI: update icons, fix a glitch when users change ROI label, hide label panel in pipelines.
- Fix some plugins wrongly loaded on Windows.
- BUGFIX 4.0.1:
* Fix the path to the online documentation.
* Allow to use data with different size or spacing in LCCLogDemons and DiffeomorphicDemons.
* Manual Registration: enhance landmark numbers for better user understanding.
* Fix Histogram Analysis width problem displaying multi-results.
medInria 3.3:
- Fix mirrored DICOM images problem
- Fix a bug in Paint toolbox with Retina screens
- Clear some toolboxes view when the user switches to an other one
- Add vtu reader and writer for mesh of type unstructured grid
- Check the version of the vtk file to avoid crash due to the new format introduced in vtk 9
- ManualRegistration, avoid duplication in outputs
- Reslice, solve crashs after removing a data in view
- PolygonROI, solve graphical/ergonomy pb and crashes (split, clear)
- Variational Segmentation: enhance GUI, solve a spacing error on output masks
- BUGFIX 3.3.1: [Four-views] solve crash closing the views
medInria 3.2:
- Add some tooltips in view navigator
- Avoid crashes if you try to open fibers data in some toolboxes
- DICOM: keep more metadata
- Remove the Generic Workspace, you can use the many existing workspaces, or create your own easily if needed
- Fix a bug where, if there is a volume and a mesh in the 2D view, changing the LUT of the mesh would also change the LUT of the image
- Fix a bug double-cliking in Polygon ROI
- Scenes: add an import and export functionality, to save the view and your parameters
- Video Export: add the export of a view as .ogv [or .mp4 possibility] or batch of .jpeg. By time, rotation of a mesh or slice
medInria v3.1.1:
- Viewer optimization: opening data is quicker, debug a window/level lag
- The annotation cube can be hidden in 3D view
- Solve some annotation text problems
- DB: remove a bug in the creation of the series
- Fix DICOM import bug with special characters
- Solve SH data image, and 4D image bugs
- PolygonROI segmentation labels enhanced
- Tools button icon, allow opening data in fix views
- Plugins from Asclepios in medInria repository
- Fix Retina screen problems with segmentations
- Registration - fix LCC Log Demons transformation crash
- Registration - put back name in undo-redo tool
- Improve 3D rendering behavior
- Add a DICOM exporter
medInria v3.1:
- Switch ITK to version 5.0.0
- Switch VTK to version 8.1.2
- Create Meshing workspace with 5 toolboxes: Create Mesh from Mask, Mesh Manipulation, Mesh Mapping, Remeshing and Iterative Closest Point
- Create Reformat workspace with 2 toolboxes: Cropping and Reslice
- Filtering workspace becomes Filtering dtk2
- Create Filtering workspace with 5 toolboxes: Binary Operation, ITK Basic Filters, Mask Application, Morphological Filters and N4 Bias Correction
- Segmentation workspace, add new toolboxes: VOI Cutter, Variational Segmentation and Polygon ROI
- Registration workspace, add a new toolbox: Manual Registration
- Paint toolbox in Segmentation is updated, can do region growing algorithm
- A log system has been added, you can find the log file on homepage -> Logs
- Histogram in views Tools button
- Possibility to open a study, dropping it in a view
- Reset camera on layer double click
- 3D orientation, change the color of the background
- Browser -> File System, path saved each time you open a directory
- Improve visibility of 2D meshes
- Pop-up to validate application exit: avoid misclicks
- Search toolbox tool in the quick access menu to find toolboxes
- Standardize Selector workspaces (with a selector combobox of toolboxes)
- Filter tool added on the top on database column in workspaces
- Right-click on a data in the database: Metadata tool lists the data metadata
- Possibility to rename data in database column with the OS shortcut (ex. F2 on Linux)
- Clarify the use of Load/Import data which become Temporary Import/Import
- Remove homepage animation, and update minimum size of the application
- Splash screen design updated, and fix transparency problem on some computers
- Improve Mouse Interaction/View settings/Layer settings ergonomy
- Fix Tensor view crash, and mesh + data display in view
- Fix save and load settings for PACS system
- Fix Dicom import with non axial acquisition
- Fix a synchronisation bug between views
- Fix a 4-split bug with the slicing
- Fix a 4-split views bug with scrolling, button in view Tools button
- Fix command-line bugs
- Fix import errors of DICOM and mha
- Fix default database path
- Fix hidden layer visibility when add a new data in a view
- Fix Composer button, and Diffusion toolboxes sizes
- Fix memory leak with meshes after view closing
- Fix thumbnail size
- Fix the slice number and location on the view when the orientation changes
- Improve packaging
medInria v3.0:
- Switch Qt backend to Qt 5.x
- Switch VTK to version 8.1, including a switch to OpenGL2 backend
- new, experimental composer workspace to run pipelines
- Introduce a new plugin framework for the previous purpose
- A bunch of new image processing algorithms: ITK basic operations (morphology, arithmetic...), bias correction...
- New data types for diffusion: multi-compartment models (view and estimation)
- enable image drag and drop on the application
- scale colormaps option for surface and fibers attributes
- many more things under the hood !
medInria v2.2.3:
- Fix registration of images encoded in unsigned short
- Add a colormap for label images
- Fix rare window-level crash
- Fix rare thumbnail creation crash
- Various bugs corrections
medInria v2.2.2:
- Minimum CMake version is now 2.8.10, as it corrects problem with automoc
- Window/Level sliders are now expressed as Min/Max for easier manipulation
- Fixed a bug that was wasting disk space by saving non persistent items on disk
- Restore split presets, ROI file loading, RGB(A) image support
- Undo/Redo support in paint segmentation
- Allow coloring of vector field by a single color for field comparisons
- Fixed Depth-Peeling on NVidia cards, improved general performance a bit
- Various bugs and crashes corrections
medInria v2.2.1:
- Presets for images are back
- Reversed Loni Lut added
- Diffusion workspace bug correction
- File association on Mac corrected
- Crashing bug in ITK basic filters solved
- Various bugs corrections
medInria v2.2.0:
- Rubber band zoom
- Add support for VTK vtp file format
- New application design
- DICOM import robustness improved
- Morphological filters (dilate, erode, open, close) added
- ITK 4.6 and VTK5.10 migration
- Vector field visualization
- HighDPI support on OSX
- New navigator to explore patients/studies/series
- New view container management system
- MPR feature added to visualize an image in all orientations
- Diffusion workspace refactored
- View and Data Management API updated
- View properties toolbox improved and a new system to link properties set up
- Corrections in time line management
- 2 new registration plugins are added : LCC log-Demons and non linear block-matching registration
- Many bug corrections
medInria v2.1.2:
- Bug fixes on view/layer synchronisation in the registration workspace
- Made image annotations more legible on any background by adding text shadows
- Fixed a crash in medPluginGenerator as well as tests
- DICOM import fixes
- Added keyboard shortcuts for orientation buttons
- Simplified paint segmentation toolbox
- File browser settings are now saved
- Mesh thumbnails are now properly rendered on Mac, no more popups on other platforms
medInria v2.1.1:
- Win64 package was using Qt 4.7 instead of 4.8
- Unix packages were using a dynamic boost, instead of static
- Temporarily disable mesh thumbnail generation on Mac due to crashes, will be fixed in 2.1.2
medInria v2.1.0:
- First open-source release, code available on github
- Database edition
- Undo-redo for registration algorithms
- New registration algorithm: pyramidal block-matching registration
- Experimental ODF visualization (for ODF in a spherical harmonics basis)
- Inter-hemispheric symmetry plane computation
- Rewritten NL-Means denoising, now includes DWI denoising
- Improved paint segmentation tool: magic wand, multi-label segmentation, controls simplification
- View orientation controls moved from right-click to the view properties toolbox
- Remove, save data, double-click to view data from any workspace using patient navigator
- Simplified ROI filtering of fiber tracts
- Direct image file opening from command line, file type association (double click on a file in Finder to view it: Mac only)
- Screenshot button and shortcut (Ctrl F)
- "Alt-Tab" like shortcut to switch between workspaces (Ctrl Shift)
- Many bug corrections and other improvements
medInria v2.0.1-1:
- Fix Dicom plugins load failures on Macos Mountain Lion
medInria v2.0.1:
- Improved UI
- Added registration algorithms: Baloo, Super Baloo, iLogDemons
- Registration always performed in float for now
- Added Segmentation Configuration preview
- Improved layer aware window level interactions
- Added INRImage support
medInria v2.0.0:
Total rewrite of the code from v 1.9.0