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🐛 Bug: Model eos92sw #355

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thormiwa opened this issue Oct 16, 2022 · 12 comments
Closed

🐛 Bug: Model eos92sw #355

thormiwa opened this issue Oct 16, 2022 · 12 comments
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bug Something isn't working help wanted Extra attention is needed

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@thormiwa
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Describe the bug.

While Trying to fetch the eos92sw Model using this command ersilia -v fetch eos92sw i get this error

`Something went wrong with Ersilia...

EmptyOutputError

Error message:
Model API eos92sw:predict did not produce an output`

Describe the steps to reproduce the behavior

  1. After Activating Ersilia with conda activate ersilia
  2. Run ersilia -v fetch eos92sw and watch the Log

Expected behavior.

No response

Screenshots.

Screenshot 2022-10-16 at 12 54 32

Operating environment

Mac M1

Additional context

No response

@thormiwa thormiwa added the bug Something isn't working label Oct 16, 2022
@GemmaTuron
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Hi @thormiwa

Please save the log of the error and attach it here so that I can see what went wrong, the screenshot is only a snippet

@thormiwa
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Hi @GemmaTuron. This is the log file
eos92sw.log

@GemmaTuron
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One question @thormiwa did you collect the log with the | tee command?

@thormiwa
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@GemmaTuron Yes this was the command i ran ersilia -v fetch eos92sw | tee -a eos92sw.log 2>&1

@GemmaTuron
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Ok, try and do it without the |tee because I think it is not saving the full full error output ;)

@thormiwa
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@GemmaTuron
eos92sw-1.log

@GemmaTuron
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Thanks @thormiwa !

I see a similar pattern with #338 and #343, so we are getting close. @miquelduranfrigola we need to have a closer look at these models, they all use sqlalchemy and also throw the chardet-urllib dependency warning.

@thormiwa can I ask you to go on and test the model in google colab see if we get the same error? (you can also use the -v flag there)

@thormiwa
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@GemmaTuron it actually ran correctly on google colab...i will update on the excel sheet and also the drive😂

@GemmaTuron
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Thanks @thormiwa !

We'll do some debugging on our side to see what is going on, will post here questions as I come across them, see if we can identify the problem.

@GemmaTuron GemmaTuron added help wanted Extra attention is needed model-bug labels Oct 18, 2022
@GemmaTuron
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Hi @thormiwa,
I have had time to look in more detail into your log files and some others and try and solve the dependency warnings issue on charset_normalizer. Please Follow the instructions on #408 to check if we can get rid of the charset_normaliser error
In addition I catched on you log file the following:
git: 'lfs' is not a git command. See 'git --help'.

So git lfs is not properly installed, please see the docs and make sure you are installing it appropriately

@Femme-js
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Hi @GemmaTuron !

I was able to fetch this model successfully on my CLI.
eos92sw.log

Neither I am getting any dependency warnings here.

Versions:
requests==2.28.1
urllib3==1.25.11
chardet==5.0.0
charset-normalizer==2.1.1

@thormiwa
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Hi @GemmaTuron After installing lfs correctly i just had to fetch, serve and predict and it ran successfully :). I will add the files to the drive and also check through other issues to support folks who might have similar error. Can i close the issue now?

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