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Snakemake8 (v8.20.3)
atacseq_pipeline (v2.0.0) - global defaults: partition shortq
cemm.slurm.cm (v.3.0.0) - global defaults: partition tinyq
For project using multiple modules, module-specific default profile does not seem to be used.
Behavior:
When sbatch snakemake conductor.sh --> the global default are used (partition: tinyq) for job rather than the module specific defaults (partition: shortq)
When the respective lines for global defaults are commented out, no partition is assigned, leading to -
WorkflowError:
SLURM job submission failed. The error message was sbatch: error: Batch job submission failed: No partition specified or system default partition
The text was updated successfully, but these errors were encountered:
Snakemake8 (v8.20.3)
atacseq_pipeline (v2.0.0) - global defaults: partition shortq
cemm.slurm.cm (v.3.0.0) - global defaults: partition tinyq
For project using multiple modules, module-specific default profile does not seem to be used.
Behavior:
When sbatch snakemake conductor.sh --> the global default are used (partition: tinyq) for job rather than the module specific defaults (partition: shortq)
When the respective lines for global defaults are commented out, no partition is assigned, leading to -
WorkflowError:
SLURM job submission failed. The error message was sbatch: error: Batch job submission failed: No partition specified or system default partition
The text was updated successfully, but these errors were encountered: