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Contents.m
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% MRI_TOOLBOX v2.0
%
% Copyright (C) 2004 Darren Weber
%
% This program is free software; you can redistribute it and/or
% modify it under the terms of the GNU General Public License
% as published by the Free Software Foundation; either version 2
% of the License, or (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program; if not, write to the Free Software Foundation,
% Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
%
% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
% avw_read - read Analyze format data image (*.img)
% avw_hdr_read - read Analyze format data header (*.hdr)
% avw_img_read - read Analyze format data image (*.img)
% avw_img_compose - compose Analyze volume from single slices
%
% avw_hdr_check_datatype - read Analyze format data header (*.hdr)
% avw_hdr_make - create Analyze format data header (avw.hdr)
%
% avw_write - write Analyze files (*.img & *.hdr)
% avw_hdr_write - write Analyze header file (*.hdr)
% avw_img_write - write Analyze image files (*.img)
%
% avw_view - create and navigate ortho views of Analyze 7.5 volume
% avw_view_hdr - view and modify Analyze header file
%
% avw_roi - extract a region of interest from avw.img
% avw_stats - calculate region of interest stats for avw data
% avw_metric - convert image location from CRS to meters
%
% avw_binary - return 0 for avw.img <= thresh, 1 otherwise
% avw_smooth - Guassian smoothing
%
% avw_center - find center of a volume
% avw_flip - ortho-flip Analyze data image (avw.img)
%
% avw2brainstorm - Convert Analyze struct into BrainStorm file
% avw2cor - converts an avw struct to FreeSurfer COR-* files
% cor2avw - Read Freesurfer MRI data (COR-001 to COR-256)
% cor_img_read - Read Freesurfer format data (COR-001 to COR-256)
%
% mni2tal - MNI to Talairach coordinates (best guess)
% mni2tal_matrix - Talairach to MNI coordinates (best guess)
% tal2mni - Talairach to MNI coordinates
%
% avw_converter_script - convert byte order of .img files
% avw_homogeneity_correction - 2D correction of MRI RF nonuniformity
%
% emse_elec2mri - convert point in head frame to mri coordinates
% emse_mri2elec - convert mri coordinates to points in head frame
% emse_open_reg - read EMSE/MRVU coregistration matrices
%
% ge_hdr2avw - extract Analyze header from ge struct
% ge_hdr_read - read the header info from a GE LX2 or 5.X file
% ge_series2avw - convert a GE series to Analyze
% ge_series_read - read a volume of images from a GE series
%
% ctf_write_mri - write a CTF .mri file
% ctf_make_mri - create a CTF mri struct with zero image
% ctf_read_mri - read a CTF .mri file
%
% gui_avw_open - Load & Display Analyze 7.5 data
% gui_cor_open - Load & Display FreeSurfer COR-??? data
% gui_ge_open - Load & Display MRI data
% gui_mri_open - Load & Display MRI data
% mri_open - function to call various mri data tools
% mri_toolbox_recent - Keep track of mri_toolbox .mat files
% mri_updateparent - General GUI data handing for MRI Toolbox
%