docker-compose.yml

# Base docker-compose file for aquarium
#
# Defines services for Aquarium, Krill, database, and S3.  Uses Docker network
# address translation, and containers for MySQL, and the Minio S3 server.
#
version: "3.5"
services:
  app:
    environment:
      - DB_NAME=${DB_NAME}
      - DB_USER=${DB_USER}
      - DB_PASSWORD=${DB_PASSWORD}
      - S3_ACCESS_KEY_ID=${S3_ID}
      - S3_SECRET_ACCESS_KEY=${S3_SECRET_ACCESS_KEY}
      - S3_REGION=${S3_REGION}
      - SECRET_KEY_BASE=${SECRET_KEY_BASE}
      - TECH_DASHBOARD=${TECH_DASHBOARD}  
      - TZ=${TIMEZONE}
    volumes:
      - ./db:/aquarium/db
      - ./log:/aquarium/log
      - ./biofab-eula.yml:/aquarium/config/user_agreement.yml
    networks:
      - aquarium_net
    expose:
      - "3000"
    depends_on:
      - db
      - s3
    cap_add:
      - NET_ADMIN
    sysctls:
      - net.ipv4.conf.all.route_localnet=1

  db:
    image: mysql:5.7
    restart: always
    environment:
      MYSQL_DATABASE: ${DB_NAME}
      MYSQL_USER: ${DB_USER}
      MYSQL_PASSWORD: ${DB_PASSWORD}
      MYSQL_ROOT_PASSWORD: ${DB_PASSWORD}
      TZ: ${TIMEZONE}
    networks:
      - aquarium_net

  krill:
    networks:
      - aquarium_net
    expose:
      - "3500"
    environment:
      DB_NAME: ${DB_NAME}
      DB_USER: ${DB_USER}
      DB_PASSWORD: ${DB_PASSWORD}
      S3_ACCESS_KEY_ID: ${S3_ID}
      S3_SECRET_ACCESS_KEY: ${S3_SECRET_ACCESS_KEY}
      S3_REGION: ${S3_REGION}
      TZ: ${TIMEZONE}
    depends_on:
      - db
      - app
    cap_add:
      - NET_ADMIN
    sysctls:
      - net.ipv4.conf.all.route_localnet=1

  s3:
    image: minio/minio:edge
    volumes:
      - ./data/s3/data:/data
      - ./data/s3/config:/root/.minio
    command: server /data
    expose:
      - "9000"
    environment:
      MINIO_ACCESS_KEY: ${S3_ID}
      MINIO_SECRET_KEY: ${S3_SECRET_ACCESS_KEY}
      MINIO_REGION: ${S3_REGION} 
    networks:
      - aquarium_net

  createbucket:
    image: minio/mc:RELEASE.2020-11-25T23-04-07Z
    depends_on:
      - s3
    entrypoint: >
      /bin/sh -c "
      while ! nc -z s3 9000; do
        sleep 1;
      done;
      sleep 5;
      /usr/bin/mc config host add aqminio http://s3:9000 ${S3_ID} ${S3_SECRET_ACCESS_KEY};
      /usr/bin/mc mb --region ${S3_REGION} -p aqminio/images;
      /usr/bin/mc policy set download aqminio/images;
      exit 0;
      "
    networks:
      - aquarium_net

  web:
    image: nginx:stable-alpine
    ports:
      - "${APP_PUBLIC_PORT:-80}:80"
      - "${S3_PUBLIC_PORT:-9000}:9000"
    networks:
      - aquarium_net
    depends_on:
      - app
      - s3
      - createbucket

networks:
  aquarium_net: