diff --git a/docs/source/basic_processing.rst b/docs/source/basic_processing.rst index a8887790a..3e61421ee 100644 --- a/docs/source/basic_processing.rst +++ b/docs/source/basic_processing.rst @@ -12,6 +12,17 @@ Image arithmetic animaImageArithmetic -i Image1.nii.gz -s Image2.nii.gz -o Diff.nii.gz +ROI intensities statistics +-------------------------- + +**animaROIIntensitiesStats** provides statistics (mean, max, median, variance) in regions of interests on an image or a list of images in a text file. + +*Example:* this computes the median in each label of roi_image.nii.gz of the input image image.nii.gz. The output is given in a csv file data.csv + +.. code-block:: sh + + animaROIIntensitiesStats -i image.nii.gz -r roi_image.nii.gz -o data.csv -s median + Image averaging ---------------